The following files are included below:
- FIJI Tutorial For DCIS-UDH Study.pdf - This is a tutorial for users new to Fiji, for how to run our image segmentation and morphological feature extraction pipeline directly in Fiji
- NUCLEISEGMENTATION_MORPHOLOGICALFEATURES.IJM - This is an ImageJ macro that takes as input epithelial-rich regions-of-interest of proliferative breast lesions, and produces the nuclear morphological features
- TEXTUREFEATURESCOMPUTATION.RAR - This is a zip folder having C++ code for computing statistical (intensity and texture) features.
- ANALYSIS.R - This is a document with all R statistical code that performed analysis and generate figures.